Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R923_PETMAUbiquitinyl hydrolase 1. (227 aa)    
Predicted Functional Partners:
S4RWF8_PETMA
Ubiquitin specific peptidase 22; Belongs to the peptidase C19 family.
 
   
 0.936
S4RLZ1_PETMA
Ubiquitin specific peptidase 3; Belongs to the peptidase C19 family.
 
     0.933
UBB
Ubiquitin B.
    
 0.888
S4R786_PETMA
USP domain-containing protein; Belongs to the peptidase C19 family.
 
      0.883
S4R481_PETMA
K(lysine) acetyltransferase 2B.
    
 0.820
S4REE3_PETMA
Transcriptional adaptor 3 (NGG1 homolog, yeast)-like.
    
 0.815
S4RJY2_PETMA
SCA7 domain-containing protein.
    
 0.815
S4R685_PETMA
TAF10 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
    
 0.811
ENY2
Transcription and mRNA export factor ENY2; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex [...]
    
 0.777
S4RMW7_PETMA
Uncharacterized protein.
   
 0.769
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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