Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R931_PETMAZgc:103625. (205 aa)    
Predicted Functional Partners:
S4RXW1_PETMA
Canopy FGF signaling regulator 2.
      
 0.611
S4RXX2_PETMA
Family with sequence similarity 160 member A2.
      
 0.610
S4R8I8_PETMA
Methyltransferase like 25.
      
 0.604
AFMID
Kynurenine formamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. Kynurenine may be further oxidized to nicotinic acid, NAD(H) and NADP(H). Required for elimination of toxic metabolites.
      
 0.461
S4RB62_PETMA
Uncharacterized protein.
      
 0.459
S4RHD2_PETMA
Mitochondrial ribosomal protein L28.
   
    0.433
S4R914_PETMA
J domain-containing protein.
 
      0.422
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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