S4R934_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

S4R934_PETMA

Uncharacterized protein. (265 aa)

Predicted Functional Partners:

S4RZK5_PETMA

0.886

S4RZ80_PETMA

0.687

S4RZ87_PETMA

0.687

S4RTS7_PETMA

0.602

LRRC2

0.599

S4RXY8_PETMA

0.593

S4S1K4_PETMA

0.593

S4RJA3_PETMA

0.588

S4S1G5_PETMA

0.587

S4RW68_PETMA

0.585

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LRRC2	S4R934_PETMA	ENSPMAP00000000897	ENSPMAP00000001715	Leucine rich repeat containing 2.	Uncharacterized protein.	0.599
S4R934_PETMA	LRRC2	ENSPMAP00000001715	ENSPMAP00000000897	Uncharacterized protein.	Leucine rich repeat containing 2.	0.599
S4R934_PETMA	S4RJA3_PETMA	ENSPMAP00000001715	ENSPMAP00000005285	Uncharacterized protein.	Uncharacterized protein.	0.588
S4R934_PETMA	S4RTS7_PETMA	ENSPMAP00000001715	ENSPMAP00000008617	Uncharacterized protein.	Uncharacterized protein.	0.602
S4R934_PETMA	S4RW68_PETMA	ENSPMAP00000001715	ENSPMAP00000009458	Uncharacterized protein.	Uncharacterized protein.	0.585
S4R934_PETMA	S4RXY8_PETMA	ENSPMAP00000001715	ENSPMAP00000010079	Uncharacterized protein.	Uncharacterized protein.	0.593
S4R934_PETMA	S4RZ80_PETMA	ENSPMAP00000001715	ENSPMAP00000010521	Uncharacterized protein.	Roundabout, axon guidance receptor, homolog 2 (Drosophila).	0.687
S4R934_PETMA	S4RZ87_PETMA	ENSPMAP00000001715	ENSPMAP00000010528	Uncharacterized protein.	Roundabout, axon guidance receptor, homolog 1 (Drosophila).	0.687
S4R934_PETMA	S4RZK5_PETMA	ENSPMAP00000001715	ENSPMAP00000010646	Uncharacterized protein.	Uncharacterized protein.	0.886
S4R934_PETMA	S4S1G5_PETMA	ENSPMAP00000001715	ENSPMAP00000011307	Uncharacterized protein.	Uncharacterized protein.	0.587
S4R934_PETMA	S4S1K4_PETMA	ENSPMAP00000001715	ENSPMAP00000011346	Uncharacterized protein.	Uncharacterized protein.	0.593
S4RJA3_PETMA	S4R934_PETMA	ENSPMAP00000005285	ENSPMAP00000001715	Uncharacterized protein.	Uncharacterized protein.	0.588
S4RJA3_PETMA	S4RTS7_PETMA	ENSPMAP00000005285	ENSPMAP00000008617	Uncharacterized protein.	Uncharacterized protein.	0.913
S4RJA3_PETMA	S4RW68_PETMA	ENSPMAP00000005285	ENSPMAP00000009458	Uncharacterized protein.	Uncharacterized protein.	0.523
S4RTS7_PETMA	S4R934_PETMA	ENSPMAP00000008617	ENSPMAP00000001715	Uncharacterized protein.	Uncharacterized protein.	0.602
S4RTS7_PETMA	S4RJA3_PETMA	ENSPMAP00000008617	ENSPMAP00000005285	Uncharacterized protein.	Uncharacterized protein.	0.913
S4RTS7_PETMA	S4RW68_PETMA	ENSPMAP00000008617	ENSPMAP00000009458	Uncharacterized protein.	Uncharacterized protein.	0.531
S4RW68_PETMA	S4R934_PETMA	ENSPMAP00000009458	ENSPMAP00000001715	Uncharacterized protein.	Uncharacterized protein.	0.585
S4RW68_PETMA	S4RJA3_PETMA	ENSPMAP00000009458	ENSPMAP00000005285	Uncharacterized protein.	Uncharacterized protein.	0.523
S4RW68_PETMA	S4RTS7_PETMA	ENSPMAP00000009458	ENSPMAP00000008617	Uncharacterized protein.	Uncharacterized protein.	0.531