S4R939_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R939_PETMA

Methyltransferase like 9. (320 aa)

Predicted Functional Partners:

S4RWA4_PETMA

0.743

S4R591_PETMA

0.722

S4RNP9_PETMA

0.695

S4RV55_PETMA

0.691

S4R5V4_PETMA

0.670

S4RXF7_PETMA

0.669

S4REQ8_PETMA

0.667

S4RXY4_PETMA

0.659

S4RHA3_PETMA

0.649

S4RHC7_PETMA

0.646

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R591_PETMA	S4R939_PETMA	ENSPMAP00000000371	ENSPMAP00000001720	Solute carrier family 39 member 10.	Methyltransferase like 9.	0.722
S4R5V4_PETMA	S4R939_PETMA	ENSPMAP00000000584	ENSPMAP00000001720	Family with sequence similarity 173 member A.	Methyltransferase like 9.	0.670
S4R5V4_PETMA	S4RHA3_PETMA	ENSPMAP00000000584	ENSPMAP00000004585	Family with sequence similarity 173 member A.	SUV3-like helicase.	0.636
S4R5V4_PETMA	S4RHC7_PETMA	ENSPMAP00000000584	ENSPMAP00000004609	Family with sequence similarity 173 member A.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.689
S4R5V4_PETMA	S4RNP9_PETMA	ENSPMAP00000000584	ENSPMAP00000006835	Family with sequence similarity 173 member A.	Methyltransferase like 21A.	0.604
S4R5V4_PETMA	S4RXF7_PETMA	ENSPMAP00000000584	ENSPMAP00000009898	Family with sequence similarity 173 member A.	Uncharacterized protein.	0.714
S4R939_PETMA	S4R591_PETMA	ENSPMAP00000001720	ENSPMAP00000000371	Methyltransferase like 9.	Solute carrier family 39 member 10.	0.722
S4R939_PETMA	S4R5V4_PETMA	ENSPMAP00000001720	ENSPMAP00000000584	Methyltransferase like 9.	Family with sequence similarity 173 member A.	0.670
S4R939_PETMA	S4REQ8_PETMA	ENSPMAP00000001720	ENSPMAP00000003690	Methyltransferase like 9.	Zgc:194242.	0.667
S4R939_PETMA	S4RHA3_PETMA	ENSPMAP00000001720	ENSPMAP00000004585	Methyltransferase like 9.	SUV3-like helicase.	0.649
S4R939_PETMA	S4RHC7_PETMA	ENSPMAP00000001720	ENSPMAP00000004609	Methyltransferase like 9.	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	0.646
S4R939_PETMA	S4RNP9_PETMA	ENSPMAP00000001720	ENSPMAP00000006835	Methyltransferase like 9.	Methyltransferase like 21A.	0.695
S4R939_PETMA	S4RV55_PETMA	ENSPMAP00000001720	ENSPMAP00000009095	Methyltransferase like 9.	Methyltransferase like 17.	0.691
S4R939_PETMA	S4RWA4_PETMA	ENSPMAP00000001720	ENSPMAP00000009494	Methyltransferase like 9.	Debranching RNA lariats 1.	0.743
S4R939_PETMA	S4RXF7_PETMA	ENSPMAP00000001720	ENSPMAP00000009898	Methyltransferase like 9.	Uncharacterized protein.	0.669
S4R939_PETMA	S4RXY4_PETMA	ENSPMAP00000001720	ENSPMAP00000010075	Methyltransferase like 9.	Methyltransferase-like protein; Belongs to the methyltransferase superfamily. METL family.	0.659
S4REQ8_PETMA	S4R939_PETMA	ENSPMAP00000003690	ENSPMAP00000001720	Zgc:194242.	Methyltransferase like 9.	0.667
S4RHA3_PETMA	S4R5V4_PETMA	ENSPMAP00000004585	ENSPMAP00000000584	SUV3-like helicase.	Family with sequence similarity 173 member A.	0.636
S4RHA3_PETMA	S4R939_PETMA	ENSPMAP00000004585	ENSPMAP00000001720	SUV3-like helicase.	Methyltransferase like 9.	0.649
S4RHC7_PETMA	S4R5V4_PETMA	ENSPMAP00000004609	ENSPMAP00000000584	Protein arginine methyltransferase NDUFAF7; Arginine methyltransferase involved in the assembly or stability of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).	Family with sequence similarity 173 member A.	0.689