Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R954_PETMADystrobrevin binding protein 1b. (190 aa)    
Predicted Functional Partners:
S4RFU7_PETMA
Biogenesis of lysosomal organelles complex-1, subunit 3.
     
 0.668
S4R8T6_PETMA
Biogenesis of lysosomal organelles complex-1, subunit 1.
     
 0.627
S4RTD0_PETMA
Dystrobrevin.
    
 
 0.596
S4RC03_PETMA
Thioredoxin domain containing 5.
    
  0.505
S4RR11_PETMA
Uncharacterized protein.
  
   
 0.484
S4RKE2_PETMA
Uncharacterized protein.
      
 0.460
S4RTV4_PETMA
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
  
   
 0.433
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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