STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R961_PETMAAminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family. (413 aa)    
Predicted Functional Partners:
S4RRJ6_PETMA
Glycine cleavage system H protein; The H protein shuttles the methylamine group of glycine from the P protein to the T protein; Belongs to the GcvH family.
 
 0.997
S4RA84_PETMA
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
 
 0.991
S4RNL3_PETMA
Serine hydroxymethyltransferase; Interconversion of serine and glycine. Belongs to the SHMT family.
 
 0.989
S4RLU2_PETMA
Dihydrolipoyl dehydrogenase.
  
 0.944
S4RX62_PETMA
Aminotran_5 domain-containing protein.
  
 
 0.930
S4RKR0_PETMA
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
  
 
 0.916
S4RUP2_PETMA
Aldedh domain-containing protein.
  
 
 0.913
S4RW96_PETMA
THF_DHG_CYH_C domain-containing protein.
  
 0.905
S4RYF9_PETMA
Uncharacterized protein.
  
 0.905
S4RGV7_PETMA
Aldehyde dehydrogenase 1 family, member L2; Belongs to the aldehyde dehydrogenase family.
  
 
 0.893
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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