Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R966_PETMAAAA domain-containing protein. (980 aa)    
Predicted Functional Partners:
S4RDZ8_PETMA
DNA replication and sister chromatid cohesion 1.
   
 0.999
S4R628_PETMA
Replication factor C (activator 1) 4.
   
 0.997
S4RP53_PETMA
Replication factor C (activator 1) 5.
   
 0.996
S4RTM7_PETMA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 0.995
S4RTP0_PETMA
Replication factor C (activator 1) 2.
   
 0.993
S4RTW0_PETMA
Replication factor C (activator 1) 3.
   
 0.993
S4RNJ7_PETMA
WD repeat and HMG-box DNA binding protein 1.
   
 
 0.989
S4RLY7_PETMA
DNA polymerase epsilon subunit; Participates in DNA repair and in chromosomal DNA replication; Belongs to the DNA polymerase epsilon subunit B family.
   
 
 0.983
S4R7R2_PETMA
AAA domain-containing protein.
   
 0.975
S4RZV0_PETMA
RAD17 checkpoint clamp loader component.
   
 0.971
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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