STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R970_PETMAUncharacterized protein. (380 aa)    
Predicted Functional Partners:
S4RG88_PETMA
Uncharacterized protein.
 
     0.950
OSGEPL1
Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance.
     
 0.650
S4RVR4_PETMA
TATA element modulatory factor 1.
     
 0.562
S4RVS6_PETMA
TNF receptor-associated factor 7.
    
 0.466
S4RAS9_PETMA
Intraflagellar transport 52 homolog (Chlamydomonas).
    
 0.465
S4R848_PETMA
Uncharacterized protein.
    
 0.457
S4RKI6_PETMA
Intraflagellar transport 88 homolog.
    
 0.455
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
  0.455
S4RWD7_PETMA
Uncharacterized protein.
    
  0.454
S4R719_PETMA
Leucine-rich repeats and guanylate kinase domain containing.
   
  0.450
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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