MRM3 protein (Petromyzon marinus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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co-expression

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[Homology]

Score

MRM3

Mitochondrial rRNA methyltransferase 3. (342 aa)

Predicted Functional Partners:

DDX28

0.973

S4R9B2_PETMA

0.961

S4RMZ2_PETMA

0.957

S4RHD2_PETMA

0.951

S4R9Z5_PETMA

0.939

S4RTH4_PETMA

0.907

S4REV2_PETMA

0.904

S4RI23_PETMA

0.900

S4RW97_PETMA

0.899

S4RIW9_PETMA

0.896

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX28	MRM3	ENSPMAP00000007697	ENSPMAP00000001757	DEAD-box helicase 28.	Mitochondrial rRNA methyltransferase 3.	0.973
DDX28	S4R9B2_PETMA	ENSPMAP00000007697	ENSPMAP00000001793	DEAD-box helicase 28.	Mitochondrial ribosomal protein S30.	0.905
DDX28	S4R9Z5_PETMA	ENSPMAP00000007697	ENSPMAP00000002026	DEAD-box helicase 28.	Mitochondrial ribosomal protein L47.	0.872
DDX28	S4REV2_PETMA	ENSPMAP00000007697	ENSPMAP00000003734	DEAD-box helicase 28.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.867
DDX28	S4RHD2_PETMA	ENSPMAP00000007697	ENSPMAP00000004614	DEAD-box helicase 28.	Mitochondrial ribosomal protein L28.	0.839
DDX28	S4RI23_PETMA	ENSPMAP00000007697	ENSPMAP00000004855	DEAD-box helicase 28.	Mitochondrial ribosomal protein L24.	0.850
DDX28	S4RIW9_PETMA	ENSPMAP00000007697	ENSPMAP00000005151	DEAD-box helicase 28.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.807
DDX28	S4RMZ2_PETMA	ENSPMAP00000007697	ENSPMAP00000006578	DEAD-box helicase 28.	Si:zfos-1192g2.3.	0.941
DDX28	S4RTH4_PETMA	ENSPMAP00000007697	ENSPMAP00000008514	DEAD-box helicase 28.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.920
DDX28	S4RW97_PETMA	ENSPMAP00000007697	ENSPMAP00000009487	DEAD-box helicase 28.	Mitochondrial ribosomal protein L21.	0.716
MRM3	DDX28	ENSPMAP00000001757	ENSPMAP00000007697	Mitochondrial rRNA methyltransferase 3.	DEAD-box helicase 28.	0.973
MRM3	S4R9B2_PETMA	ENSPMAP00000001757	ENSPMAP00000001793	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein S30.	0.961
MRM3	S4R9Z5_PETMA	ENSPMAP00000001757	ENSPMAP00000002026	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L47.	0.939
MRM3	S4REV2_PETMA	ENSPMAP00000001757	ENSPMAP00000003734	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.904
MRM3	S4RHD2_PETMA	ENSPMAP00000001757	ENSPMAP00000004614	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L28.	0.951
MRM3	S4RI23_PETMA	ENSPMAP00000001757	ENSPMAP00000004855	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L24.	0.900
MRM3	S4RIW9_PETMA	ENSPMAP00000001757	ENSPMAP00000005151	Mitochondrial rRNA methyltransferase 3.	Mitochondrial GTPase 1; Plays a role in the regulation of the mitochondrial ribosome assembly and of translational activity. Displays mitochondrial GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.	0.896
MRM3	S4RMZ2_PETMA	ENSPMAP00000001757	ENSPMAP00000006578	Mitochondrial rRNA methyltransferase 3.	Si:zfos-1192g2.3.	0.957
MRM3	S4RTH4_PETMA	ENSPMAP00000001757	ENSPMAP00000008514	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.907
MRM3	S4RW97_PETMA	ENSPMAP00000001757	ENSPMAP00000009487	Mitochondrial rRNA methyltransferase 3.	Mitochondrial ribosomal protein L21.	0.899