S4R983_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R983_PETMA

Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family. (264 aa)

Predicted Functional Partners:

S4R8B4_PETMA

0.999

S4RTH4_PETMA

0.997

S4RWT1_PETMA

0.995

NDUFAB1

0.993

S4RBS3_PETMA

0.992

S4RHD2_PETMA

0.992

S4RII9_PETMA

0.992

S4RFB7_PETMA

0.991

S4RTC6_PETMA

0.991

S4RUR2_PETMA

0.991

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NDUFAB1	S4R8B4_PETMA	ENSPMAP00000008252	ENSPMAP00000001445	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L2.	0.988
NDUFAB1	S4R983_PETMA	ENSPMAP00000008252	ENSPMAP00000001764	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.993
NDUFAB1	S4RBS3_PETMA	ENSPMAP00000008252	ENSPMAP00000002654	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L15.	0.994
NDUFAB1	S4RFB7_PETMA	ENSPMAP00000008252	ENSPMAP00000003899	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.771
NDUFAB1	S4RHD2_PETMA	ENSPMAP00000008252	ENSPMAP00000004614	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L28.	0.993
NDUFAB1	S4RII9_PETMA	ENSPMAP00000008252	ENSPMAP00000005021	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.992
NDUFAB1	S4RTC6_PETMA	ENSPMAP00000008252	ENSPMAP00000008466	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L4.	0.976
NDUFAB1	S4RTH4_PETMA	ENSPMAP00000008252	ENSPMAP00000008514	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.991
NDUFAB1	S4RWT1_PETMA	ENSPMAP00000008252	ENSPMAP00000009671	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Mitochondrial ribosomal protein L10.	0.977
S4R8B4_PETMA	NDUFAB1	ENSPMAP00000001445	ENSPMAP00000008252	Mitochondrial ribosomal protein L2.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.988
S4R8B4_PETMA	S4R983_PETMA	ENSPMAP00000001445	ENSPMAP00000001764	Mitochondrial ribosomal protein L2.	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	0.999
S4R8B4_PETMA	S4RBS3_PETMA	ENSPMAP00000001445	ENSPMAP00000002654	Mitochondrial ribosomal protein L2.	Mitochondrial ribosomal protein L15.	0.992
S4R8B4_PETMA	S4RFB7_PETMA	ENSPMAP00000001445	ENSPMAP00000003899	Mitochondrial ribosomal protein L2.	Uncharacterized protein; Belongs to the universal ribosomal protein uL14 family.	0.995
S4R8B4_PETMA	S4RHD2_PETMA	ENSPMAP00000001445	ENSPMAP00000004614	Mitochondrial ribosomal protein L2.	Mitochondrial ribosomal protein L28.	0.989
S4R8B4_PETMA	S4RII9_PETMA	ENSPMAP00000001445	ENSPMAP00000005021	Mitochondrial ribosomal protein L2.	Mitochondrial ribosomal protein L22; Belongs to the universal ribosomal protein uL22 family.	0.998
S4R8B4_PETMA	S4RTC6_PETMA	ENSPMAP00000001445	ENSPMAP00000008466	Mitochondrial ribosomal protein L2.	Mitochondrial ribosomal protein L4.	0.996
S4R8B4_PETMA	S4RTH4_PETMA	ENSPMAP00000001445	ENSPMAP00000008514	Mitochondrial ribosomal protein L2.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.995
S4R8B4_PETMA	S4RUR2_PETMA	ENSPMAP00000001445	ENSPMAP00000008952	Mitochondrial ribosomal protein L2.	Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.	0.992
S4R8B4_PETMA	S4RWT1_PETMA	ENSPMAP00000001445	ENSPMAP00000009671	Mitochondrial ribosomal protein L2.	Mitochondrial ribosomal protein L10.	0.988
S4R983_PETMA	NDUFAB1	ENSPMAP00000001764	ENSPMAP00000008252	Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.993