Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SYNGR4Synaptogyrin. (225 aa)    
Predicted Functional Partners:
S4RLW8_PETMA
Uncharacterized protein.
      
 0.674
S4RIS6_PETMA
Transmembrane channel-like protein.
      
 0.666
S4RVW1_PETMA
Uncharacterized protein.
      
 0.663
S4RCM9_PETMA
Secretory carrier-associated membrane protein.
   
 
 0.643
S4RBJ8_PETMA
Si:dkey-31g6.6.
      
 0.641
S4RTA1_PETMA
Beta_elim_lyase domain-containing protein.
      
 0.614
S4RR09_PETMA
Uncharacterized protein.
      
 0.610
S4RY49_PETMA
Male germ cell-associated kinase.
   
    0.501
AFMID
Kynurenine formamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation. Kynurenine may be further oxidized to nicotinic acid, NAD(H) and NADP(H). Required for elimination of toxic metabolites.
   
  
 0.500
S4RLN9_PETMA
Uncharacterized protein.
   
  
 0.442
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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