STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SS18L1SS18L1 subunit of BAF chromatin remodeling complex. (274 aa)    
Predicted Functional Partners:
S4R8I1_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1.
   
 
 0.935
SMARCB1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1; Belongs to the SNF5 family.
    
 
 0.808
S4RYV2_PETMA
D4, zinc and double PHD fingers family 2.
    
 
 0.799
S4RJF0_PETMA
AT rich interactive domain 1B (SWI1-like).
    
 
 0.745
S4RH82_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1.
    
 
 0.702
S4RJQ4_PETMA
Bromo domain-containing protein.
   
 
 0.701
S4RLQ6_PETMA
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2.
   
 
 0.663
S4RRJ5_PETMA
SANT domain-containing protein.
   
 
 0.663
S4RN62_PETMA
Actin-like 6A; Belongs to the actin family.
    
 
 0.651
S4RV91_PETMA
AT rich interactive domain 2 (ARID, RFX-like).
    
 
 0.624
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.