Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R990_PETMARNA binding motif protein 34. (374 aa)    
Predicted Functional Partners:
S4RDX2_PETMA
DEAD (Asp-Glu-Ala-Asp) box polypeptide 27; Belongs to the DEAD box helicase family.
   
  0.994
S4RR36_PETMA
Spb1_C domain-containing protein.
   
 
 0.994
S4RDD2_PETMA
RRM domain-containing protein.
   
 
 0.991
S4RGY9_PETMA
Brix domain containing 2.
   
 
 0.990
S4R5Y2_PETMA
Helicase C-terminal domain-containing protein.
   
 0.988
S4RXX4_PETMA
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.987
DDX54
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. DDX54/DBP10 subfamily.
   
 0.986
S4RS71_PETMA
Nucleolar protein interacting with the FHA domain of MKI67.
   
 
 0.986
S4R6V7_PETMA
WD repeat domain 74.
   
 
 0.985
S4RH56_PETMA
Uncharacterized protein.
   
 
 0.984
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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