Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R998_PETMASyntaphilin a. (182 aa)    
Predicted Functional Partners:
SNAP25-2
Synaptosomal-associated protein; Belongs to the SNAP-25 family.
   
  
 0.625
S4RV97_PETMA
Zgc:110130.
      
 0.590
S4RCM9_PETMA
Secretory carrier-associated membrane protein.
      
 0.580
S4RBL7_PETMA
Neurexophilin 2b.
  
    0.520
S4RFI7_PETMA
Neurexophilin 1.
  
    0.520
S4RJE2_PETMA
RING-type domain-containing protein.
  
     0.519
ENSPMAP00000010609
annotation not available
  
     0.519
S4R8J5_PETMA
TAFA chemokine like family member 4a.
  
    0.510
S4RPR9_PETMA
Uncharacterized protein.
   
  
 0.504
S4S1L5_PETMA
Neuropeptide Y; Belongs to the NPY family.
  
     0.503
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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