Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM63Tripartite motif containing 63. (352 aa)    
Predicted Functional Partners:
S4RGF2_PETMA
Tripartite motif containing 54.
  
  
 
0.903
S4REM4_PETMA
Sequestosome 1.
    
 0.630
UBE2N
Ubiquitin conjugating enzyme E2 N.
    
 0.530
DDX41
DEAD-box helicase 41.
    
 0.525
S4RNV8_PETMA
Protein kinase domain-containing protein.
    
 0.506
PPL
Periplakin.
    
 0.497
S4RF48_PETMA
Growth arrest-specific 7a.
    
  0.491
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.488
UBB
Ubiquitin B.
    
  0.485
S4RQA2_PETMA
Ion_trans domain-containing protein.
    
  0.481
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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