Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R9B4_PETMAUncharacterized protein. (383 aa)    
Predicted Functional Partners:
UBB
Ubiquitin B.
    
   0.864
S4R4G9_PETMA
Uncharacterized protein; Belongs to the peptidase C14A family.
     
 0.798
S4RJU5_PETMA
Uncharacterized protein; Belongs to the peptidase C14A family.
     
 0.798
S4R4F2_PETMA
Ring finger and CCCH-type domains 1a.
      
 0.671
S4R9Q8_PETMA
Uncharacterized protein.
      
 0.668
S4RNZ8_PETMA
RAB11 family interacting protein 1 (class I) a.
      
 0.662
S4R525_PETMA
ATP/GTP binding protein 1.
      
 0.564
S4R4I2_PETMA
ANK_REP_REGION domain-containing protein.
   
 
 0.532
S4R5Q5_PETMA
Uncharacterized protein.
    
 
 0.514
S4R8R5_PETMA
Poly [ADP-ribose] polymerase.
    
 
 0.514
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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