Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R9C7_PETMAUncharacterized protein. (430 aa)    
Predicted Functional Partners:
S4RZX1_PETMA
Nuclear receptor subfamily 2, group E, member 3.
    
 0.901
S4RT06_PETMA
Uncharacterized protein.
 
      0.900
S4RQE0_PETMA
Retinoblastoma binding protein 5.
    
 
 0.886
S4RWT0_PETMA
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.678
S4RP24_PETMA
WD repeat and SOCS box containing 1.
    
   0.671
S4RJP3_PETMA
Uncharacterized protein.
    
 0.657
S4RWC7_PETMA
Uncharacterized protein.
    
 0.657
S4RV40_PETMA
Hist_deacetyl domain-containing protein.
    
 0.655
S4RXT2_PETMA
Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
    
 0.655
S4RNH0_PETMA
Reticulon.
      
 0.612
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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