STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R9D2_PETMAUncharacterized protein. (338 aa)    
Predicted Functional Partners:
S4R769_PETMA
RRM domain-containing protein.
   
 0.975
PHF5A
PHD finger protein 5A.
   
 0.934
S4S071_PETMA
Poly-U binding splicing factor b.
   
 0.913
S4RRE1_PETMA
Leucine rich repeat containing 51.
    
  0.900
S4RU57_PETMA
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 
 0.888
S4RWA4_PETMA
Debranching RNA lariats 1.
 
      0.810
S4RTT9_PETMA
Splicing factor 3b, subunit 4.
   
 0.797
S4R4Z7_PETMA
DEAQ box RNA-dependent ATPase 1.
   
 0.785
S4RWQ3_PETMA
OB_NTP_bind domain-containing protein.
   
 0.785
S4RRN5_PETMA
Splicing factor 3a, subunit 1.
   
0.779
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.