Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R9E2_PETMAHECT domain-containing protein. (828 aa)    
Predicted Functional Partners:
S4RLY9_PETMA
Uncharacterized protein.
   
 0.916
NSUN2
NOP2/Sun RNA methyltransferase 2; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
  
   0.822
S4RDS6_PETMA
Ubiquitin-conjugating enzyme E2L 3a; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.819
S4RH70_PETMA
DUF1081 domain-containing protein.
      
 0.764
S4RU69_PETMA
Minichromosome maintenance 8 homologous recombination repair factor; Belongs to the MCM family.
    
 
 0.738
S4R516_PETMA
Myxovirus (influenza) resistance B; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
   
 
 0.735
S4RNL4_PETMA
WWE domain-containing protein.
   
 
 0.727
S4RDQ3_PETMA
Proteasome 26S subunit, non-ATPase 4a.
    
 
 0.726
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
 0.706
S4RU94_PETMA
Proteasome subunit beta.
    
 
 0.674
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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