Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R9F1_PETMAGeneral transcription factor IIH, polypeptide 5. (71 aa)    
Predicted Functional Partners:
S4RIB7_PETMA
General transcription factor IIH, polypeptide 3.
    
 0.999
S4RK75_PETMA
Excision repair cross-complementation group 3.
    
 0.999
S4RQB2_PETMA
Excision repair cross-complementation group 2.
    
 0.997
XPA
XPA, DNA damage recognition and repair factor.
    
 0.996
S4R8U4_PETMA
General transcription factor IIH, polypeptide 2.
    
 0.995
S4RI17_PETMA
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.992
S4RSV8_PETMA
General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.
    
 0.992
S4R5M3_PETMA
Cyclin_C_2 domain-containing protein.
    
 0.980
S4RQC7_PETMA
Xeroderma pigmentosum, complementation group C.
    
 0.974
S4R7M8_PETMA
Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.
    
 0.964
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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