STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R9G9_PETMAMeis_PKNOX_N domain-containing protein. (133 aa)    
Predicted Functional Partners:
WWTR1
WW domain containing transcription regulator 1.
    
 0.875
S4RVF5_PETMA
WW domain-containing protein.
    
 0.875
S4RIK6_PETMA
Homeobox domain-containing protein.
    
 0.703
S4RSV2_PETMA
Homeobox domain-containing protein.
    
 
 0.636
S4RYU2_PETMA
Hematopoietically expressed homeobox.
    
 
 0.622
S4RM85_PETMA
ARID domain-containing protein.
    
 
 0.566
S4RN39_PETMA
AT rich interactive domain 4A (RBP1-like).
    
 
 0.566
S4S1R1_PETMA
Homeobox domain-containing protein.
    
 
 0.558
S4R4I8_PETMA
Uncharacterized protein.
    
 
 0.557
S4R6C2_PETMA
Pbx/knotted 1 homeobox 2.
    
0.545
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.