S4R9I7_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R9I7_PETMA

Uncharacterized protein. (213 aa)

Predicted Functional Partners:

S4RM76_PETMA

0.990

S4RMG5_PETMA

0.983

S4RZC9_PETMA

0.938

S4RRL2_PETMA

0.844

S4R495_PETMA

0.748

S4RL73_PETMA

0.748

SLX1

0.719

S4RSP8_PETMA

0.710

S4RB75_PETMA

0.694

S4R619_PETMA

0.653

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R495_PETMA	S4R9I7_PETMA	ENSPMAP00000000024	ENSPMAP00000001868	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.748
S4R495_PETMA	S4RM76_PETMA	ENSPMAP00000000024	ENSPMAP00000006312	WD_REPEATS_REGION domain-containing protein.	Protein phosphatase 1, regulatory subunit 21.	0.447
S4R619_PETMA	S4R9I7_PETMA	ENSPMAP00000000649	ENSPMAP00000001868	DUF4708 domain-containing protein.	Uncharacterized protein.	0.653
S4R9I7_PETMA	S4R495_PETMA	ENSPMAP00000001868	ENSPMAP00000000024	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.748
S4R9I7_PETMA	S4R619_PETMA	ENSPMAP00000001868	ENSPMAP00000000649	Uncharacterized protein.	DUF4708 domain-containing protein.	0.653
S4R9I7_PETMA	S4RB75_PETMA	ENSPMAP00000001868	ENSPMAP00000002456	Uncharacterized protein.	ADH_N domain-containing protein.	0.694
S4R9I7_PETMA	S4RL73_PETMA	ENSPMAP00000001868	ENSPMAP00000005959	Uncharacterized protein.	TBC1 domain containing kinase.	0.748
S4R9I7_PETMA	S4RM76_PETMA	ENSPMAP00000001868	ENSPMAP00000006312	Uncharacterized protein.	Protein phosphatase 1, regulatory subunit 21.	0.990
S4R9I7_PETMA	S4RMG5_PETMA	ENSPMAP00000001868	ENSPMAP00000006401	Uncharacterized protein.	Protein kinase domain-containing protein.	0.983
S4R9I7_PETMA	S4RRL2_PETMA	ENSPMAP00000001868	ENSPMAP00000007848	Uncharacterized protein.	Glutamine amidotransferase like class 1 domain containing 1.	0.844
S4R9I7_PETMA	S4RSP8_PETMA	ENSPMAP00000001868	ENSPMAP00000008238	Uncharacterized protein.	Exocyst complex component 8.	0.710
S4R9I7_PETMA	S4RZC9_PETMA	ENSPMAP00000001868	ENSPMAP00000010570	Uncharacterized protein.	PKS_ER domain-containing protein.	0.938
S4R9I7_PETMA	SLX1	ENSPMAP00000001868	ENSPMAP00000003229	Uncharacterized protein.	Structure-specific endonuclease subunit SLX1; Catalytic subunit of the SLX1-SLX4 structure-specific endonuclease that resolves DNA secondary structures generated during DNA repair and recombination. Has endonuclease activity towards branched DNA substrates, introducing single-strand cuts in duplex DNA close to junctions with ss-DNA.	0.719
S4RB75_PETMA	S4R9I7_PETMA	ENSPMAP00000002456	ENSPMAP00000001868	ADH_N domain-containing protein.	Uncharacterized protein.	0.694
S4RB75_PETMA	S4RM76_PETMA	ENSPMAP00000002456	ENSPMAP00000006312	ADH_N domain-containing protein.	Protein phosphatase 1, regulatory subunit 21.	0.584
S4RB75_PETMA	S4RRL2_PETMA	ENSPMAP00000002456	ENSPMAP00000007848	ADH_N domain-containing protein.	Glutamine amidotransferase like class 1 domain containing 1.	0.651
S4RL73_PETMA	S4R9I7_PETMA	ENSPMAP00000005959	ENSPMAP00000001868	TBC1 domain containing kinase.	Uncharacterized protein.	0.748
S4RL73_PETMA	S4RM76_PETMA	ENSPMAP00000005959	ENSPMAP00000006312	TBC1 domain containing kinase.	Protein phosphatase 1, regulatory subunit 21.	0.447
S4RL73_PETMA	S4RMG5_PETMA	ENSPMAP00000005959	ENSPMAP00000006401	TBC1 domain containing kinase.	Protein kinase domain-containing protein.	0.899
S4RM76_PETMA	S4R495_PETMA	ENSPMAP00000006312	ENSPMAP00000000024	Protein phosphatase 1, regulatory subunit 21.	WD_REPEATS_REGION domain-containing protein.	0.447