Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R9I8_PETMAFA complementation group I. (908 aa)    
Predicted Functional Partners:
S4RMQ1_PETMA
FA complementation group L.
    
 0.999
S4RPK0_PETMA
Uncharacterized protein.
   
 0.999
S4R670_PETMA
Uncharacterized protein.
   
 0.997
S4RI29_PETMA
Ubiquitin-conjugating enzyme E2T (putative); Belongs to the ubiquitin-conjugating enzyme family.
   
 0.997
S4RP14_PETMA
FA core complex associated protein 24.
    
 0.996
S4RXS2_PETMA
USP domain-containing protein; Belongs to the peptidase C19 family.
   
 0.994
S4RDE2_PETMA
Helicase ATP-binding domain-containing protein.
   
 0.993
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
  0.992
S4RRY8_PETMA
WD repeat domain 48a.
    
 0.990
S4RDW5_PETMA
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.978
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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