Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MTO1Mitochondrial tRNA translation optimization 1. (663 aa)    
Predicted Functional Partners:
S4R726_PETMA
GTP binding protein 3, mitochondrial.
 
 0.993
S4RVF9_PETMA
SPT7 like, STAGA complex gamma subunit.
   
  
 0.914
S4RHQ9_PETMA
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.899
S4RQ94_PETMA
Coiled-coil domain containing 127a.
      
 0.879
S4RN99_PETMA
Pumilio RNA-binding family member 1.
    
   0.812
S4RRG2_PETMA
Pumilio RNA-binding family member 2.
    
   0.812
S4RBC7_PETMA
Mitochondrial methionyl-tRNA formyltransferase.
  
  
 0.771
S4RD32_PETMA
Ankyrin repeat and SOCS box containing 7.
    
 
 0.747
S4RJZ9_PETMA
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
      
 0.704
S4REI2_PETMA
Molybdenum cofactor synthesis 3.
      
 0.698
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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