Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
S4R9J3_PETMACollagen IV NC1 domain-containing protein. (678 aa)    
Predicted Functional Partners:
S4RHX2_PETMA
Uncharacterized protein.
    
   0.618
S4REP7_PETMA
LAM_G_DOMAIN domain-containing protein.
 
  
  0.578
S4RLG3_PETMA
Uncharacterized protein.
 
      0.550
S4RPX1_PETMA
Collagen, type VI, alpha 1.
  
 
0.546
S4RAG5_PETMA
Fibrillar collagen NC1 domain-containing protein.
 
    
0.526
S4RJ23_PETMA
C1q domain-containing protein.
  
     0.512
S4RW50_PETMA
C1q domain-containing protein.
  
     0.474
ENSPMAP00000006806
annotation not available
  
     0.459
S4RJS5_PETMA
Uncharacterized protein.
  
 
 
0.435
S4REX1_PETMA
Uncharacterized protein.
  
 
 
0.433
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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