Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R9J4_PETMAATM interactor. (662 aa)    
Predicted Functional Partners:
S4RBG7_PETMA
UBR-type domain-containing protein.
    
 
 0.874
S4RPL8_PETMA
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.728
S4RUC9_PETMA
TAN domain-containing protein.
    
 0.728
S4RHT0_PETMA
WRN helicase interacting protein 1.
    
 
 0.699
S4RS81_PETMA
NDK domain-containing protein; Belongs to the NDK family.
    
 0.583
S4RQH3_PETMA
Fanconi-associated nuclease; Nuclease required for the repair of DNA interstrand cross- links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions. Belongs to the FAN1 family.
      
 0.556
S4R848_PETMA
Uncharacterized protein.
    
  0.548
S4R5V3_PETMA
tRNA-synt_1 domain-containing protein.
    
 
 0.494
S4RH36_PETMA
Uncharacterized protein.
    
 
 0.494
S4RKK4_PETMA
E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.
      
 0.454
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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