Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RDH16Retinol dehydrogenase 16; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (248 aa)    
Predicted Functional Partners:
S4R5F2_PETMA
Aldehyde dehydrogenase 8 family, member A1; Belongs to the aldehyde dehydrogenase family.
     
 0.617
S4R4Y1_PETMA
Zgc:56585; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.470
S4R7G9_PETMA
2,4-dienoyl CoA reductase 2, peroxisomal.
  
  
 0.447
S4RJ25_PETMA
Malate dehydrogenase.
   
 
 0.435
S4RPJ9_PETMA
3-oxoacid CoA transferase 1b.
     
 0.435
S4RW07_PETMA
Uncharacterized protein.
     
 0.422
S4R688_PETMA
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
    
 
 0.418
S4RFQ9_PETMA
Aminolevulinate, delta-, synthase 2.
     
 0.416
S4RKR9_PETMA
Dehydrogenase/reductase (SDR family) member 7B; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.416
S4RYH8_PETMA
Dehydrogenase/reductase (SDR family) member 7; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.405
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.