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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R9L2_PETMARetinol dehydrogenase 5 (11-cis/9-cis); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (325 aa)    
Predicted Functional Partners:
LRAT
Lecithin retinol acyltransferase.
     
 0.791
LRAT-2
Lecithin retinol acyltransferase.
     
 0.791
S4RRB8_PETMA
Uncharacterized protein.
  
  
0.777
S4R9B1_PETMA
Si:dkey-221h15.4; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
0.773
S4RI71_PETMA
DEP domain-containing protein.
   
 
 0.761
S4RW07_PETMA
Uncharacterized protein.
     
 0.761
S4RBR6_PETMA
Aldedh domain-containing protein.
   
 
 0.760
S4RSZ9_PETMA
Hydroxysteroid (17-beta) dehydrogenase 7.
     
 0.760
S4RES3_PETMA
3Beta_HSD domain-containing protein.
     
 0.755
S4RW13_PETMA
Hydroxysteroid (17-beta) dehydrogenase 12b; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
     
 0.755
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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