Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
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S4R9L2_PETMARetinol dehydrogenase 5 (11-cis/9-cis); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (325 aa)    
Predicted Functional Partners:
LRAT
Lecithin retinol acyltransferase.
      
 0.481
LRAT-2
Lecithin retinol acyltransferase.
      
 0.481
S4R4Y1_PETMA
Zgc:56585; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.445
S4RJ25_PETMA
Malate dehydrogenase.
   
 
 0.435
S4RPJ9_PETMA
3-oxoacid CoA transferase 1b.
     
 0.435
S4RW07_PETMA
Uncharacterized protein.
     
 0.422
S4R688_PETMA
Uncharacterized protein; Belongs to the FPP/GGPP synthase family.
    
 
 0.418
S4RFQ9_PETMA
Aminolevulinate, delta-, synthase 2.
     
 0.416
S4RKR9_PETMA
Dehydrogenase/reductase (SDR family) member 7B; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
 
 0.416
S4R7G9_PETMA
2,4-dienoyl CoA reductase 2, peroxisomal.
  
  
 0.411
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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