Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
S4R9L4_PETMAUncharacterized protein. (349 aa)    
Predicted Functional Partners:
S4RRF8_PETMA
Uncharacterized protein.
     
 0.818
S4RCD2_PETMA
Cullin-associated and neddylation-dissociated 1.
     
  0.785
ASB5
Ankyrin repeat and SOCS box containing 5.
     
 0.713
S4RIQ9_PETMA
Cullin 5a; Belongs to the cullin family.
    
 0.686
S4RRV5_PETMA
Gem (nuclear organelle) associated protein 8.
      
 0.679
S4RHN5_PETMA
Sulfite oxidase; Belongs to the cytochrome b5 family.
      
 0.675
S4R6Q1_PETMA
Copper metabolism (Murr1) domain containing 1.
     
  0.650
S4RRI1_PETMA
Neuralized E3 ubiquitin protein ligase 2.
     
 0.638
S4RTH7_PETMA
Elongin C paralog a; Belongs to the SKP1 family.
    
  0.633
S4RR98_PETMA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.628
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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