Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R9L7_PETMACalponin-homology (CH) domain-containing protein. (934 aa)    
Predicted Functional Partners:
S4RPV3_PETMA
Uncharacterized protein.
 
    
0.894
ASB2
Ankyrin repeat and SOCS box containing 2.
    
 
 0.863
S4RSM3_PETMA
Integrin beta; Belongs to the integrin beta chain family.
    
 
 0.815
S4RHT6_PETMA
LIM domain containing preferred translocation partner in lipoma.
   
 0.683
S4RRQ1_PETMA
Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.
    
 
 0.677
S4RLY9_PETMA
Uncharacterized protein.
    
  0.609
S4RH85_PETMA
Uncharacterized protein.
    
 0.597
ACTG2
Actin gamma 2, smooth muscle.
    
 0.597
ACTB
Beta-actin.
    
 0.597
S4R854_PETMA
Uncharacterized protein.
    
   0.589
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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