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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R9M3_PETMADEAH (Asp-Glu-Ala-His) box polypeptide 8. (757 aa)    
Predicted Functional Partners:
S4RMU5_PETMA
CWC22 spliceosome associated protein homolog.
   
 0.927
S4RN48_PETMA
WD_REPEATS_REGION domain-containing protein.
   
 0.916
DDX49
DEAD-box helicase 49; Belongs to the DEAD box helicase family.
  
 0.893
S4RX55_PETMA
YJU2 splicing factor homolog.
    
 0.887
S4RXJ6_PETMA
DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa.
   
 0.886
S4REJ8_PETMA
NOP14 nucleolar protein homolog (yeast).
 
 
 0.880
S4RPS6_PETMA
UTP25 small subunit processor component.
   
 0.879
S4R4K3_PETMA
Uncharacterized protein.
   
 0.878
S4R4V1_PETMA
PRP18 pre-mRNA processing factor 18 homolog (yeast).
   
 0.873
S4RGF7_PETMA
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.868
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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