STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R9N2_PETMAS100 calcium binding protein, beta (neural). (93 aa)    
Predicted Functional Partners:
S4RJQ7_PETMA
F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
    
  0.993
S4R6C9_PETMA
Non-specific serine/threonine protein kinase.
    
 
 0.895
S4RSA8_PETMA
Uncharacterized protein.
    
   0.836
S4RX11_PETMA
Uncharacterized protein.
    
 
 0.834
S4RAD9_PETMA
Microtubule-associated protein.
   
 
 0.798
S4RCW8_PETMA
Microtubule-associated protein.
   
 
 0.798
S4RJ53_PETMA
Stromal cell derived factor 4.
      
 0.715
S4RE82_PETMA
Desmin b; Belongs to the intermediate filament family.
   
 
 0.700
S4RWI4_PETMA
RNA binding fox-1 homolog 3b.
   
  
 0.628
S4R568_PETMA
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family.
   
  
 0.623
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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