Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R9P3_PETMAFYVE-type domain-containing protein. (124 aa)    
Predicted Functional Partners:
S4RJL2_PETMA
RUN domain-containing protein.
 
 
   0.992
S4R8W9_PETMA
AAA_12 domain-containing protein.
 
      0.711
S4RR09_PETMA
Uncharacterized protein.
    
   0.663
S4RTQ0_PETMA
Phenazine biosynthesis like protein domain containing.
      
 0.651
S4RY23_PETMA
Cholesterol 25-hydroxylase like 3.
 
      0.548
S4RJZ6_PETMA
Uncharacterized protein; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.534
S4RST2_PETMA
ADP-ribosylation factor-like 8Ba; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.534
DNA2
DNA replication helicase/nuclease 2.
 
      0.521
S4R9U8_PETMA
MAP3K12 binding inhibitory protein 1.
      
 0.496
S4RRZ3_PETMA
RAB33B, member RAS oncogene family a.
    
 
 0.474
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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