S4R9Q0_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R9Q0_PETMA

RSN1_7TM domain-containing protein. (248 aa)

Predicted Functional Partners:

S4RZZ4_PETMA

0.937

S4RRJ2_PETMA

0.488

S4RPE1_PETMA

0.484

S4R682_PETMA

0.460

S4RF22_PETMA

0.459

S4RIB8_PETMA

0.459

S4RJ31_PETMA

0.459

SAMD4B

0.459

S4RNM6_PETMA

0.438

S4RQT3_PETMA

0.433

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
S4R682_PETMA	S4R9Q0_PETMA	ENSPMAP00000000712	ENSPMAP00000001931	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	RSN1_7TM domain-containing protein.	0.460
S4R682_PETMA	S4RF22_PETMA	ENSPMAP00000000712	ENSPMAP00000003804	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	PX domain-containing protein.	0.508
S4R682_PETMA	S4RJ31_PETMA	ENSPMAP00000000712	ENSPMAP00000005213	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	PX domain-containing protein.	0.508
S4R682_PETMA	S4RZZ4_PETMA	ENSPMAP00000000712	ENSPMAP00000010785	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	Uncharacterized protein.	0.460
S4R9Q0_PETMA	S4R682_PETMA	ENSPMAP00000001931	ENSPMAP00000000712	RSN1_7TM domain-containing protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.460
S4R9Q0_PETMA	S4RF22_PETMA	ENSPMAP00000001931	ENSPMAP00000003804	RSN1_7TM domain-containing protein.	PX domain-containing protein.	0.459
S4R9Q0_PETMA	S4RIB8_PETMA	ENSPMAP00000001931	ENSPMAP00000004950	RSN1_7TM domain-containing protein.	Transmembrane protein 147.	0.459
S4R9Q0_PETMA	S4RJ31_PETMA	ENSPMAP00000001931	ENSPMAP00000005213	RSN1_7TM domain-containing protein.	PX domain-containing protein.	0.459
S4R9Q0_PETMA	S4RNM6_PETMA	ENSPMAP00000001931	ENSPMAP00000006812	RSN1_7TM domain-containing protein.	Cytoplasmic FMR1-interacting protein; Belongs to the CYFIP family.	0.438
S4R9Q0_PETMA	S4RPE1_PETMA	ENSPMAP00000001931	ENSPMAP00000007077	RSN1_7TM domain-containing protein.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.484
S4R9Q0_PETMA	S4RQT3_PETMA	ENSPMAP00000001931	ENSPMAP00000007569	RSN1_7TM domain-containing protein.	Uncharacterized protein.	0.433
S4R9Q0_PETMA	S4RRJ2_PETMA	ENSPMAP00000001931	ENSPMAP00000007828	RSN1_7TM domain-containing protein.	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	0.488
S4R9Q0_PETMA	S4RZZ4_PETMA	ENSPMAP00000001931	ENSPMAP00000010785	RSN1_7TM domain-containing protein.	Uncharacterized protein.	0.937
S4R9Q0_PETMA	SAMD4B	ENSPMAP00000001931	ENSPMAP00000008991	RSN1_7TM domain-containing protein.	Sterile alpha motif domain containing 4B.	0.459
S4RF22_PETMA	S4R682_PETMA	ENSPMAP00000003804	ENSPMAP00000000712	PX domain-containing protein.	Coatomer subunit beta; The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin- coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.	0.508
S4RF22_PETMA	S4R9Q0_PETMA	ENSPMAP00000003804	ENSPMAP00000001931	PX domain-containing protein.	RSN1_7TM domain-containing protein.	0.459
S4RF22_PETMA	S4RJ31_PETMA	ENSPMAP00000003804	ENSPMAP00000005213	PX domain-containing protein.	PX domain-containing protein.	0.557
S4RF22_PETMA	S4RZZ4_PETMA	ENSPMAP00000003804	ENSPMAP00000010785	PX domain-containing protein.	Uncharacterized protein.	0.459
S4RIB8_PETMA	S4R9Q0_PETMA	ENSPMAP00000004950	ENSPMAP00000001931	Transmembrane protein 147.	RSN1_7TM domain-containing protein.	0.459
S4RIB8_PETMA	S4RRJ2_PETMA	ENSPMAP00000004950	ENSPMAP00000007828	Transmembrane protein 147.	Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.	0.722