STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R9R1_PETMAUncharacterized protein. (377 aa)    
Predicted Functional Partners:
S4RYR0_PETMA
ABC transporter domain-containing protein.
 
      0.900
S4RNN9_PETMA
ABC transporter domain-containing protein.
 
      0.899
S4RMP0_PETMA
ATP synthase F1 subunit gamma.
   
   0.508
S4RR89_PETMA
ATP synthase F1 subunit delta.
    
   0.491
S4RBG8_PETMA
ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.465
S4RMC6_PETMA
Uncharacterized protein.
    
 
 0.465
S4RVV1_PETMA
ATP synthase peripheral stalk-membrane subunit b.
    
   0.443
S4R7B5_PETMA
Protein-serine/threonine kinase.
    
 0.438
S4RBS9_PETMA
Protein-serine/threonine kinase.
    
 0.438
S4RD11_PETMA
Protein-serine/threonine kinase.
    
 0.438
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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