Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R9S2_PETMAPleckstrin homology domain containing, family M (with RUN domain) member 2. (915 aa)    
Predicted Functional Partners:
S4RDQ3_PETMA
Proteasome 26S subunit, non-ATPase 4a.
   
 
 0.939
S4RHU9_PETMA
Proteasome 26S subunit, non-ATPase 2.
   
 
 0.929
S4RGQ0_PETMA
Proteasome 26S subunit, non-ATPase 14.
   
 
 0.928
UBB
Ubiquitin B.
   
 
 0.899
S4R848_PETMA
Uncharacterized protein.
   
 
 0.870
S4RAA6_PETMA
Proteasome subunit alpha type.
   
 
 0.847
S4RS79_PETMA
Proteasome 26S subunit, ATPase 5; Belongs to the AAA ATPase family.
   
   0.838
S4RZB2_PETMA
Ubiquitin carboxyl-terminal hydrolase.
    
   0.824
S4RR10_PETMA
Zinc finger, AN1-type domain 4.
   
 
 0.746
S4R7H0_PETMA
Ubiquitin protein ligase E3C.
   
 
 0.719
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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