Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MMP24Matrix metallopeptidase 24. (582 aa)    
Predicted Functional Partners:
TIMP1
TIMP metallopeptidase inhibitor 1.
    
 0.834
S4R956_PETMA
Uncharacterized protein.
    
 0.733
S4RC78_PETMA
NTR domain-containing protein.
    
 0.688
S4RCQ8_PETMA
Matrix metallopeptidase 2.
   
  0.598
S4RJC9_PETMA
ZnMc domain-containing protein.
   
  0.598
S4RUI1_PETMA
Uncharacterized protein.
   
  0.598
S4RX10_PETMA
Proprotein convertase subtilisin/kexin type 7.
    
 0.549
S4RLX8_PETMA
Uncharacterized protein.
    
  0.547
S4RNQ2_PETMA
Link domain-containing protein.
    
 0.532
S4RW47_PETMA
Insulin-like growth factor binding protein 5b.
    
 0.496
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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