Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R9T6_PETMAUncharacterized protein. (1166 aa)    
Predicted Functional Partners:
S4RKZ1_PETMA
RAB guanine nucleotide exchange factor (GEF) 1.
   
 0.962
S4RHF3_PETMA
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 0.926
RANBP2
RAN binding protein 2.
   
 0.926
S4RS81_PETMA
NDK domain-containing protein; Belongs to the NDK family.
   
 
 0.926
S4RSD1_PETMA
VPS9 domain-containing protein.
 
 
 0.924
S4RMK2_PETMA
Uncharacterized protein.
    
 0.895
S4RVX9_PETMA
WD repeat domain 90.
    
 0.895
S4S027_PETMA
DnaJ (Hsp40) homolog, subfamily C, member 10.
   
 
 0.874
S4RWT9_PETMA
Uncharacterized protein.
    
 
 0.848
S4R719_PETMA
Leucine-rich repeats and guanylate kinase domain containing.
    
 0.846
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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