STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AASSAminoadipate-semialdehyde synthase. (475 aa)    
Predicted Functional Partners:
S4RUH7_PETMA
Sacchrp_dh_C domain-containing protein.
 
     0.947
S4RLD8_PETMA
Aminoadipate-semialdehyde dehydrogenase.
  
 
 0.943
S4REM5_PETMA
Aldehyde dehydrogenase 7 family, member A1; Belongs to the aldehyde dehydrogenase family.
  
 
 0.852
S4RLK7_PETMA
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
 
      0.833
S4R9W5_PETMA
Arginase.
    
 0.832
S4RKS5_PETMA
Spermidine synthase; Belongs to the spermidine/spermine synthase family.
    
 0.832
S4REQ4_PETMA
Aminotran_1_2 domain-containing protein.
    
 0.813
S4RTF2_PETMA
Glutamine synthetase.
    
 0.813
S4RB16_PETMA
Ethanolamine-phosphate phospho-lyase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 
  0.812
SODM_PETMA
Superoxide dismutase [Mn], mitochondrial; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems.
    
  0.800
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.