S4R9U7_PETMA protein (Petromyzon marinus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

S4R9U7_PETMA

Uncharacterized protein. (1323 aa)

Predicted Functional Partners:

S4RB85_PETMA

0.974

PNP

0.972

PNP-2

0.972

S4R8E2_PETMA

0.917

S4RAN6_PETMA

0.915

S4REC6_PETMA

0.903

S4RHN5_PETMA

0.900

S4S1B4_PETMA

0.746

S4R7T9_PETMA

0.669

S4RIH3_PETMA

0.669

Your Current Organism:

Petromyzon marinus

NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PNP	PNP-2	ENSPMAP00000007353	ENSPMAP00000008520	Purine nucleoside phosphorylase.	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	0.902
PNP	S4R9U7_PETMA	ENSPMAP00000007353	ENSPMAP00000001978	Purine nucleoside phosphorylase.	Uncharacterized protein.	0.972
PNP	S4RAN6_PETMA	ENSPMAP00000007353	ENSPMAP00000002267	Purine nucleoside phosphorylase.	FAD-binding PCMH-type domain-containing protein.	0.967
PNP	S4RB85_PETMA	ENSPMAP00000007353	ENSPMAP00000002466	Purine nucleoside phosphorylase.	Uncharacterized protein.	0.533
PNP	S4REC6_PETMA	ENSPMAP00000007353	ENSPMAP00000003558	Purine nucleoside phosphorylase.	Adenine phosphoribosyltransferase.	0.980
PNP	S4S1B4_PETMA	ENSPMAP00000007353	ENSPMAP00000011256	Purine nucleoside phosphorylase.	Adenosine deaminase tRNA specific 3.	0.753
PNP-2	PNP	ENSPMAP00000008520	ENSPMAP00000007353	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Purine nucleoside phosphorylase.	0.902
PNP-2	S4R9U7_PETMA	ENSPMAP00000008520	ENSPMAP00000001978	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein.	0.972
PNP-2	S4RAN6_PETMA	ENSPMAP00000008520	ENSPMAP00000002267	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	FAD-binding PCMH-type domain-containing protein.	0.967
PNP-2	S4RB85_PETMA	ENSPMAP00000008520	ENSPMAP00000002466	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Uncharacterized protein.	0.533
PNP-2	S4REC6_PETMA	ENSPMAP00000008520	ENSPMAP00000003558	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Adenine phosphoribosyltransferase.	0.980
PNP-2	S4S1B4_PETMA	ENSPMAP00000008520	ENSPMAP00000011256	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	Adenosine deaminase tRNA specific 3.	0.753
S4R7T9_PETMA	S4R9U7_PETMA	ENSPMAP00000001269	ENSPMAP00000001978	C2 domain-containing protein.	Uncharacterized protein.	0.669
S4R7T9_PETMA	S4RAN6_PETMA	ENSPMAP00000001269	ENSPMAP00000002267	C2 domain-containing protein.	FAD-binding PCMH-type domain-containing protein.	0.669
S4R7T9_PETMA	S4RIH3_PETMA	ENSPMAP00000001269	ENSPMAP00000005005	C2 domain-containing protein.	PDZ domain-containing protein.	0.956
S4R8E2_PETMA	S4R9U7_PETMA	ENSPMAP00000001473	ENSPMAP00000001978	Thiopurine S-methyltransferase, tandem duplicate 1.	Uncharacterized protein.	0.917
S4R8E2_PETMA	S4RAN6_PETMA	ENSPMAP00000001473	ENSPMAP00000002267	Thiopurine S-methyltransferase, tandem duplicate 1.	FAD-binding PCMH-type domain-containing protein.	0.906
S4R9U7_PETMA	PNP	ENSPMAP00000001978	ENSPMAP00000007353	Uncharacterized protein.	Purine nucleoside phosphorylase.	0.972
S4R9U7_PETMA	PNP-2	ENSPMAP00000001978	ENSPMAP00000008520	Uncharacterized protein.	Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.	0.972
S4R9U7_PETMA	S4R7T9_PETMA	ENSPMAP00000001978	ENSPMAP00000001269	Uncharacterized protein.	C2 domain-containing protein.	0.669