Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R9V8_PETMAZRAB1B, member RAS oncogene family a. (205 aa)    
Predicted Functional Partners:
S4RTD5_PETMA
Golgi brefeldin A resistant guanine nucleotide exchange factor 1.
    
 0.989
S4RYK5_PETMA
Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi.
   
 0.982
S4R4G8_PETMA
Rab geranylgeranyltransferase subunit beta.
    
 0.981
S4RT45_PETMA
Uncharacterized protein.
    
 0.978
S4RW00_PETMA
Bet1 golgi vesicular membrane trafficking protein.
    
 0.971
S4R6K4_PETMA
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.969
S4RDF4_PETMA
Uso1_p115_head domain-containing protein.
   
 0.964
S4RHG7_PETMA
Uncharacterized protein.
   
 0.964
S4RYH1_PETMA
RAB11B, member RAS oncogene family, a.
   
 0.961
S4R920_PETMA
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.955
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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