Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R9V9_PETMARing finger protein 103. (699 aa)    
Predicted Functional Partners:
S4RU07_PETMA
Charged multivesicular body protein 3.
 
    
 0.821
S4RMF7_PETMA
UBX domain protein 7.
    
 
 0.812
UBE2N
Ubiquitin conjugating enzyme E2 N.
   
 0.690
S4RRK1_PETMA
Ring finger protein 145b.
    
 
 0.637
S4RP44_PETMA
Ubiquitin-like domain-containing protein.
    
 0.564
S4RMR7_PETMA
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 
 0.549
S4RI29_PETMA
Ubiquitin-conjugating enzyme E2T (putative); Belongs to the ubiquitin-conjugating enzyme family.
   
 0.528
S4RYP1_PETMA
Ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast), like; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.528
S4R672_PETMA
Relaxin family peptide receptor 2b.
    
 0.522
S4RMY8_PETMA
Leucine-rich repeat containing G protein-coupled receptor 4.
    
 0.522
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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