Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
S4R9W1_PETMACell division cycle and apoptosis regulator 1. (900 aa)    
Predicted Functional Partners:
S4RH22_PETMA
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.964
S4RDS5_PETMA
PRP40 pre-mRNA processing factor 40 homolog A.
   
  0.923
S4RAJ1_PETMA
RNA binding motif protein 5.
   
 0.915
S4R9T3_PETMA
Uncharacterized protein.
    
 0.865
S4RBJ3_PETMA
Heat shock 60 protein 1; Belongs to the chaperonin (HSP60) family.
    
   0.835
S4RKM3_PETMA
Ring finger protein 113A.
    
   0.807
S4RIM1_PETMA
Uncharacterized protein.
   
   0.791
S4R790_PETMA
Transcription elongation regulator 1a (CA150).
   
 
  0.757
S4RR24_PETMA
Uncharacterized protein.
   
 
  0.757
EIF3F
Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
    
 
 0.736
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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