Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R9W9_PETMASplicing factor 3b, subunit 3. (1217 aa)    
Predicted Functional Partners:
S4R8C8_PETMA
Splicing factor 3b, subunit 1.
   
 0.999
PHF5A
PHD finger protein 5A.
   
 0.999
S4RLU8_PETMA
DEAD (Asp-Glu-Ala-Asp) box helicase 42; Belongs to the DEAD box helicase family.
   
 0.999
S4RN41_PETMA
RRM domain-containing protein.
    
 0.999
S4RQ08_PETMA
Splicing factor 3b, subunit 2.
   
 0.999
S4RTT9_PETMA
Splicing factor 3b, subunit 4.
   
 0.999
S4S1D5_PETMA
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.999
S4R7J6_PETMA
Splicing factor 3a, subunit 3.
   
 0.997
SF3B2
Splicing factor 3b subunit 2.
   
 0.995
S4RRN5_PETMA
Splicing factor 3a, subunit 1.
   
 0.995
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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