STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R9X0_PETMARabenosyn, RAB effector. (650 aa)    
Predicted Functional Partners:
S4RHQ9_PETMA
Vacuolar protein sorting 45 homolog; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.996
S4RZF2_PETMA
RAB4B, member RAS oncogene family.
    
 0.990
EHD1
EH domain containing 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.926
S4RPZ0_PETMA
Uncharacterized protein.
    
 0.926
RAB31
RAB31, member RAS oncogene family.
   
 0.911
S4R480_PETMA
RAB5C, member RAS oncogene family.
   
 0.896
S4R8L0_PETMA
Uncharacterized protein.
   
 0.896
S4RTX0_PETMA
Uncharacterized protein.
   
 0.896
S4R8L4_PETMA
Uncharacterized protein.
   
 0.889
S4RJ61_PETMA
Sarcalumenin; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.860
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.