Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ARRDC3Arrestin domain containing 3. (292 aa)    
Predicted Functional Partners:
S4RCA3_PETMA
E3 ubiquitin-protein ligase.
    
 
 0.679
S4RRA8_PETMA
Thioredoxin domain-containing protein.
    
 0.674
S4RWM2_PETMA
Thioredoxin; Belongs to the thioredoxin family.
    
 0.674
S4RNR7_PETMA
Uncharacterized protein.
   
 
 0.671
S4RNC3_PETMA
Aquaporin 8a, tandem duplicate 1; Belongs to the MIP/aquaporin (TC 1.A.8) family.
      
 0.610
S4RL11_PETMA
WW domain-containing protein.
    
 
 0.588
S4RL99_PETMA
NEDD4 E3 ubiquitin protein ligase a.
    
 
 0.588
S4S0U5_PETMA
Adrenoceptor beta 2, surface a; Belongs to the G-protein coupled receptor 1 family.
    
 
 0.562
S4S1T1_PETMA
Adrenoceptor beta 1; Belongs to the G-protein coupled receptor 1 family.
    
 
 0.562
AQP4
Aquaporin 4; Belongs to the MIP/aquaporin (TC 1.A.8) family.
      
 0.544
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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