STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4R9Y0_PETMAUncharacterized protein. (105 aa)    
Predicted Functional Partners:
S4RQ02_PETMA
Ras converting CAAX endopeptidase 1a.
   
 0.992
TBCCD1
C-CAP/cofactor C-like domain-containing protein.
      
 0.828
S4RVY9_PETMA
Peptidase_M48 domain-containing protein.
    
 
 0.823
S4RZP9_PETMA
GINS complex subunit 1 (Psf1 homolog).
      
 0.780
S4RIG5_PETMA
HRas proto-oncogene, GTPase b.
    
 0.741
S4R922_PETMA
Glucose-fructose oxidoreductase domain containing 2.
     
 0.720
S4RGV9_PETMA
Regulator of chromosome condensation 1.
   
  
 0.639
S4RQS3_PETMA
Uncharacterized protein.
   
  
 0.639
S4RKW0_PETMA
VPS26, retromer complex component A.
      
 0.632
NAT10
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
      
 0.630
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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