Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
S4R9Y6_PETMAMitochondrial ribosomal protein S25. (173 aa)    
Predicted Functional Partners:
S4RET7_PETMA
Mitochondrial ribosomal protein S22.
   
 0.999
S4RHS8_PETMA
Mitochondrial ribosomal protein S2.
   
 0.999
S4RSM6_PETMA
Mitochondrial ribosomal protein S5; Belongs to the universal ribosomal protein uS5 family.
   
 0.999
MRPS12
Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
   
 0.999
S4RUR2_PETMA
Uncharacterized protein; Belongs to the universal ribosomal protein uS11 family.
   
 0.999
S4RZV1_PETMA
Mitochondrial ribosomal protein S27.
   
 0.999
S4S0H5_PETMA
Uncharacterized protein.
   
 0.999
S4R504_PETMA
Mitochondrial ribosomal protein S26.
   
 0.998
S4R5N5_PETMA
Uncharacterized protein.
   
  0.998
MRPS14
Mitochondrial ribosomal protein S14.
   
 0.998
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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