Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC29Leucine rich repeat containing 29. (291 aa)    
Predicted Functional Partners:
S4RHX4_PETMA
Cullin 1b; Belongs to the cullin family.
    
 0.714
S4RC67_PETMA
F-box protein 33.
      
 0.702
S4R859_PETMA
F-box protein 25.
     
 0.693
S4RR98_PETMA
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.669
FBXO47
F-box protein 47.
      
 0.635
S4RS81_PETMA
NDK domain-containing protein; Belongs to the NDK family.
    
 
 0.587
S4RNR8_PETMA
Uncharacterized protein.
     
 0.536
S4RXG4_PETMA
F-box domain-containing protein.
     
 0.536
S4RTH7_PETMA
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.511
S4R979_PETMA
Zgc:66475.
    
 0.499
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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