STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
S4RAB1_PETMACCR4-NOT transcription complex, subunit 10. (340 aa)    
Predicted Functional Partners:
S4RA19_PETMA
CCR4-NOT transcription complex, subunit 11.
    
 0.989
S4RYN4_PETMA
CCR4-NOT transcription complex, subunit 1.
    
 0.989
S4RGU3_PETMA
Uncharacterized protein.
 
  
  0.950
S4RB50_PETMA
CCR4-NOT transcription complex, subunit 2.
   
 0.940
S4RYH0_PETMA
CCR4-NOT transcription complex, subunit 4b.
     
 0.849
S4R4R5_PETMA
NOT2_3_5 domain-containing protein.
   
 0.830
S4RKE7_PETMA
Not3 domain-containing protein.
   
 0.830
S4RWF1_PETMA
Not3 domain-containing protein.
   
 0.830
S4RM54_PETMA
CCR4-NOT transcription complex, subunit 6-like.
    
 0.814
S4RS96_PETMA
Anti_prolifrtn domain-containing protein.
    
 0.739
Your Current Organism:
Petromyzon marinus
NCBI taxonomy Id: 7757
Other names: P. marinus, marine lamprey, sea lamprey, sea lampreys
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.